Detailed information of SNP:
|
SNP ID:
sf1019619264(Gbrowse)
Chromosome: chr10 Position: 19619264 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 68.64% | 31.36% |
| All Indica | 798 | 97.99% | 2.01% |
| All Japonica | 496 | 16.33% | 83.67% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 93 | 67.74% | 32.26% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019619264 | A->C | LOC_Os10g36780(LOC_Os10g36780.3) | INTRON |
| sf1019619264 | A->C | LOC_Os10g36780(LOC_Os10g36780.2) | INTRON |
| sf1019619264 | A->C | LOC_Os10g36780(LOC_Os10g36780.1) | INTRON |
| sf1019619264 | A->C | LOC_Os10g36780(LOC_Os10g36780.4) | INTRON |