Detailed information of SNP:
|
SNP ID:
sf1019626894(Gbrowse)
Chromosome: chr10 Position: 19626894 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1299 | 83.76% | 16.24% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 380 | 46.58% | 53.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 243 | 22.63% | 77.37% |
| Tropical Japonica | 83 | 97.59% | 2.41% |
| Japonica Intermediate | 54 | 75.93% | 24.07% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019626894 | A->C | INTERGENIC | None |