Detailed information of SNP:
|
SNP ID:
sf1019679650(Gbrowse)
Chromosome: chr10 Position: 19679650 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 51.59% | 48.41% |
| All Indica | 775 | 18.84% | 81.16% |
| All Japonica | 489 | 94.68% | 5.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 3.81% | 96.19% |
| Indica II | 210 | 35.71% | 64.29% |
| Indica Intermediate | 198 | 28.79% | 71.21% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 87 | 77.01% | 22.99% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019679650 | C->T | INTERGENIC | None |