Detailed information of SNP:
|
SNP ID:
sf1019703922(Gbrowse)
Chromosome: chr10 Position: 19703922 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 50.67% | 49.33% |
| All Indica | 797 | 68.01% | 31.99% |
| All Japonica | 497 | 15.29% | 84.71% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 65.33% | 34.67% |
| Indica II | 211 | 71.56% | 28.44% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019703922 | C->T | INTERGENIC | None |