Detailed information of SNP:
|
SNP ID:
sf1019783630(Gbrowse)
Chromosome: chr10 Position: 19783630 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 62.24% | 37.76% |
| All Indica | 782 | 46.29% | 53.71% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 365 | 41.37% | 58.63% |
| Indica II | 211 | 51.66% | 48.34% |
| Indica Intermediate | 206 | 49.51% | 50.49% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019783630 | G->T | LOC_Os10g37090(LOC_Os10g37090.1) | Non-Synonymous SNP |