Detailed information of SNP:
|
SNP ID:
sf1019801400(Gbrowse)
Chromosome: chr10 Position: 19801400 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1379 | 80.71% | 19.29% |
| All Indica | 768 | 74.87% | 25.13% |
| All Japonica | 494 | 96.56% | 3.44% |
| Aus | 64 | 48.44% | 51.56% |
| Indica I | 362 | 89.50% | 10.50% |
| Indica II | 205 | 54.63% | 45.37% |
| Indica Intermediate | 201 | 69.15% | 30.85% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 84.62% | 15.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019801400 | A->G | INTERGENIC | None |