Detailed information of SNP:
|
SNP ID:
sf1019802252(Gbrowse)
Chromosome: chr10 Position: 19802252 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 88.75% | 11.25% |
| All Indica | 771 | 81.32% | 18.68% |
| All Japonica | 495 | 98.18% | 1.82% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 358 | 70.39% | 29.61% |
| Indica II | 207 | 93.24% | 6.76% |
| Indica Intermediate | 206 | 88.35% | 11.65% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 94.57% | 5.43% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019802252 | G->A | INTERGENIC | None |