Detailed information of SNP:
|
SNP ID:
sf1019862819(Gbrowse)
Chromosome: chr10 Position: 19862819 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 93.77% | 6.23% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 491 | 83.30% | 16.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 88 | 69.32% | 30.68% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019862819 | A->G | LOC_Os10g37240(LOC_Os10g37240.4) | INTRON |