Detailed information of SNP:
|
SNP ID:
sf1019872911(Gbrowse)
Chromosome: chr10 Position: 19872911 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 57.40% | 42.60% |
| All Indica | 799 | 44.31% | 55.69% |
| All Japonica | 497 | 87.73% | 12.27% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 52.80% | 47.20% |
| Indica II | 213 | 46.48% | 53.52% |
| Indica Intermediate | 211 | 27.01% | 72.99% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019872911 | G->A | INTERGENIC | None |