Detailed information of SNP:
|
SNP ID:
sf1019888769(Gbrowse)
Chromosome: chr10 Position: 19888769 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 59.69% | 40.31% |
| All Indica | 799 | 49.44% | 50.56% |
| All Japonica | 497 | 85.92% | 14.08% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 62.93% | 37.07% |
| Indica II | 213 | 46.01% | 53.99% |
| Indica Intermediate | 211 | 28.91% | 71.09% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019888769 | T->C | INTERGENIC | None |