Detailed information of SNP:
|
SNP ID:
sf1019889132(Gbrowse)
Chromosome: chr10 Position: 19889132 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1249 | 83.03% | 16.97% |
| All Indica | 671 | 75.86% | 24.14% |
| All Japonica | 467 | 91.65% | 8.35% |
| Aus | 58 | 91.38% | 8.62% |
| Indica I | 315 | 78.73% | 21.27% |
| Indica II | 197 | 83.76% | 16.24% |
| Indica Intermediate | 159 | 60.38% | 39.62% |
| Temperate Japonica | 331 | 96.68% | 3.32% |
| Tropical Japonica | 71 | 64.79% | 35.21% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019889132 | T->A | INTERGENIC | None |