Detailed information of SNP:
|
SNP ID:
sf1019890402(Gbrowse)
Chromosome: chr10 Position: 19890402 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 98.44% | 1.56% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 487 | 95.69% | 4.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 94.56% | 5.44% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019890402 | G->A | LOC_Os10g37270(LOC_Os10g37270.1) | Synonymous |