Detailed information of SNP:
|
SNP ID:
sf1019937600(Gbrowse)
Chromosome: chr10 Position: 19937600 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1159 | 91.80% | 8.20% |
| All Indica | 577 | 85.62% | 14.38% |
| All Japonica | 478 | 97.91% | 2.09% |
| Aus | 57 | 100.00% | 0.00% |
| Indica I | 258 | 83.72% | 16.28% |
| Indica II | 172 | 91.86% | 8.14% |
| Indica Intermediate | 147 | 81.63% | 18.37% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 76 | 92.11% | 7.89% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 33 | 93.94% | 6.06% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019937600 | C->T | INTERGENIC | None |