Detailed information of SNP:
|
SNP ID:
sf1019967258(Gbrowse)
Chromosome: chr10 Position: 19967258 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 85.45% | 14.55% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 475 | 58.95% | 41.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 320 | 42.50% | 57.50% |
| Tropical Japonica | 89 | 96.63% | 3.37% |
| Japonica Intermediate | 66 | 87.88% | 12.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1019967258 | A->C | INTERGENIC | None |