Detailed information of SNP:
|
SNP ID:
sf1020052249(Gbrowse)
Chromosome: chr10 Position: 20052249 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 64.55% | 35.45% |
| All Indica | 798 | 48.75% | 51.25% |
| All Japonica | 497 | 88.93% | 11.07% |
| Aus | 66 | 56.06% | 43.94% |
| Indica I | 375 | 51.73% | 48.27% |
| Indica II | 212 | 57.55% | 42.45% |
| Indica Intermediate | 211 | 34.60% | 65.40% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020052249 | G->A | INTERGENIC | None |