Detailed information of SNP:
|
SNP ID:
sf1020091336(Gbrowse)
Chromosome: chr10 Position: 20091336 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 87.38% | 12.62% |
| All Indica | 798 | 85.21% | 14.79% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 53.77% | 46.23% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020091336 | A->G | INTERGENIC | None |