Detailed information of SNP:
|
SNP ID:
sf1020112022(Gbrowse)
Chromosome: chr10 Position: 20112022 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 67.98% | 32.02% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 497 | 12.68% | 87.32% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020112022 | A->G | LOC_Os10g37720(LOC_Os10g37720.2) | Non-Synonymous SNP |
| sf1020112022 | A->G | LOC_Os10g37720(LOC_Os10g37720.1) | Non-Synonymous SNP |