Detailed information of SNP:
|
SNP ID:
sf1020118466(Gbrowse)
Chromosome: chr10 Position: 20118466 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 62.69% | 37.31% |
| All Indica | 796 | 95.10% | 4.90% |
| All Japonica | 497 | 7.85% | 92.15% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 373 | 96.25% | 3.75% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020118466 | T->G | INTERGENIC | None |