Detailed information of SNP:
|
SNP ID:
sf1020135207(Gbrowse)
Chromosome: chr10 Position: 20135207 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 95.64% | 4.36% |
| All Indica | 767 | 97.91% | 2.09% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 59 | 37.29% | 62.71% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 185 | 91.89% | 8.11% |
| Indica Intermediate | 207 | 99.52% | 0.48% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020135207 | G->A | INTERGENIC | None |