Detailed information of SNP:
|
SNP ID:
sf1020144051(Gbrowse)
Chromosome: chr10 Position: 20144051 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1353 | 59.28% | 40.72% |
| All Indica | 734 | 92.92% | 7.08% |
| All Japonica | 497 | 6.64% | 93.36% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 364 | 91.48% | 8.52% |
| Indica II | 177 | 97.18% | 2.82% |
| Indica Intermediate | 193 | 91.71% | 8.29% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020144051 | T->C | INTERGENIC | None |