Detailed information of SNP:
|
SNP ID:
sf1020149587(Gbrowse)
Chromosome: chr10 Position: 20149587 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 64.97% | 35.03% |
| All Indica | 775 | 98.06% | 1.94% |
| All Japonica | 495 | 8.28% | 91.72% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 365 | 98.63% | 1.37% |
| Indica II | 203 | 96.55% | 3.45% |
| Indica Intermediate | 207 | 98.55% | 1.45% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 92 | 34.78% | 65.22% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020149587 | A->G | INTERGENIC | None |