Detailed information of SNP:
|
SNP ID:
sf1020220089(Gbrowse)
Chromosome: chr10 Position: 20220089 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 86.93% | 13.07% |
| All Indica | 788 | 77.41% | 22.59% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 369 | 78.32% | 21.68% |
| Indica II | 210 | 77.62% | 22.38% |
| Indica Intermediate | 209 | 75.60% | 24.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020220089 | G->T | INTERGENIC | None |