Detailed information of SNP:
|
SNP ID:
sf1020330938(Gbrowse)
Chromosome: chr10 Position: 20330938 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 72.78% | 27.22% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 497 | 34.00% | 66.00% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 35.52% | 64.48% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020330938 | T->C | INTERGENIC | None |