Detailed information of SNP:
|
SNP ID:
sf1020331315(Gbrowse)
Chromosome: chr10 Position: 20331315 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1377 | 62.45% | 37.55% |
| All Indica | 797 | 99.50% | 0.50% |
| All Japonica | 492 | 5.69% | 94.31% |
| Aus | 48 | 31.25% | 68.75% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 92 | 23.91% | 76.09% |
| Japonica Intermediate | 65 | 1.54% | 98.46% |
| Group VI/Aromatic | 1 | 100.00% | 0.00% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020331315 | C->A | INTERGENIC | None |