Detailed information of SNP:
SNP ID:
sf1020366847(Gbrowse)
Chromosome: chr10 Position: 20366847 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1311 | 95.19% | 4.81% |
All Indica | 706 | 93.20% | 6.80% |
All Japonica | 494 | 98.38% | 1.62% |
Aus | 63 | 95.24% | 4.76% |
Indica I | 332 | 93.98% | 6.02% |
Indica II | 188 | 92.55% | 7.45% |
Indica Intermediate | 186 | 92.47% | 7.53% |
Temperate Japonica | 334 | 99.70% | 0.30% |
Tropical Japonica | 92 | 92.39% | 7.61% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 10 | 60.00% | 40.00% |
Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1020366847 | T->A | LOC_Os10g38160(LOC_Os10g38160.1) | INTRON |