Detailed information of SNP:
|
SNP ID:
sf1020421101(Gbrowse)
Chromosome: chr10 Position: 20421101 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1353 | 61.05% | 38.95% |
| All Indica | 739 | 97.83% | 2.17% |
| All Japonica | 494 | 7.69% | 92.31% |
| Aus | 65 | 49.23% | 50.77% |
| Indica I | 341 | 98.24% | 1.76% |
| Indica II | 204 | 97.06% | 2.94% |
| Indica Intermediate | 194 | 97.94% | 2.06% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 91 | 21.98% | 78.02% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020421101 | G->A | INTERGENIC | None |