Detailed information of SNP:
|
SNP ID:
sf1020422426(Gbrowse)
Chromosome: chr10 Position: 20422426 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 61.23% | 38.77% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 496 | 5.85% | 94.15% |
| Aus | 64 | 32.81% | 67.19% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 10 | 40.00% | 60.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020422426 | C->A | LOC_Os10g38350(LOC_Os10g38350.1) | Non-Synonymous SNP |