Detailed information of SNP:
|
SNP ID:
sf1020422445(Gbrowse)
Chromosome: chr10 Position: 20422445 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 73.16% | 26.84% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 490 | 32.65% | 67.35% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 329 | 18.54% | 81.46% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 67 | 25.37% | 74.63% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020422445 | T->C | LOC_Os10g38350(LOC_Os10g38350.1) | Synonymous |