Detailed information of SNP:
|
SNP ID:
sf1020423272(Gbrowse)
Chromosome: chr10 Position: 20423272 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1348 | 97.70% | 2.30% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 431 | 93.27% | 6.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 303 | 96.70% | 3.30% |
| Tropical Japonica | 69 | 73.91% | 26.09% |
| Japonica Intermediate | 59 | 98.31% | 1.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020423272 | C->A | INTERGENIC | None |