Detailed information of SNP:
|
SNP ID:
sf1020431946(Gbrowse)
Chromosome: chr10 Position: 20431946 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1284 | 73.99% | 26.01% |
| All Indica | 673 | 73.11% | 26.89% |
| All Japonica | 496 | 74.40% | 25.60% |
| Aus | 63 | 79.37% | 20.63% |
| Indica I | 316 | 70.25% | 29.75% |
| Indica II | 180 | 78.89% | 21.11% |
| Indica Intermediate | 177 | 72.32% | 27.68% |
| Temperate Japonica | 334 | 83.23% | 16.77% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020431946 | T->C | LOC_Os10g38370(LOC_Os10g38370.1) | Non-Synonymous SNP |