Detailed information of SNP:
|
SNP ID:
sf1020436617(Gbrowse)
Chromosome: chr10 Position: 20436617 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 93.13% | 6.87% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 492 | 80.69% | 19.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 87.69% | 12.31% |
| Tropical Japonica | 92 | 53.26% | 46.74% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020436617 | C->T | LOC_Os10g38370(LOC_Os10g38370.1) | Synonymous |