Detailed information of SNP:
|
SNP ID:
sf1020466418(Gbrowse)
Chromosome: chr10 Position: 20466418 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 78.87% | 21.13% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 489 | 48.06% | 51.94% |
| Aus | 66 | 53.03% | 46.97% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 329 | 38.30% | 61.70% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 66 | 39.39% | 60.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020466418 | A->T | LOC_Os10g38450(LOC_Os10g38450.1) | UTR_3_PRIME |