Detailed information of SNP:
|
SNP ID:
sf1020492011(Gbrowse)
Chromosome: chr10 Position: 20492011 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 58.91% | 41.09% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020492011 | C->G | INTERGENIC | None |