Detailed information of SNP:
|
SNP ID:
sf1020496896(Gbrowse)
Chromosome: chr10 Position: 20496896 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1374 | 72.42% | 27.58% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 457 | 26.48% | 73.52% |
| Aus | 62 | 64.52% | 35.48% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 304 | 21.38% | 78.62% |
| Tropical Japonica | 93 | 41.94% | 58.06% |
| Japonica Intermediate | 60 | 28.33% | 71.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020496896 | C->T | INTERGENIC | None |