Detailed information of SNP:
|
SNP ID:
sf1020511460(Gbrowse)
Chromosome: chr10 Position: 20511460 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1373 | 79.10% | 20.90% |
| All Indica | 754 | 63.40% | 36.60% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 359 | 52.65% | 47.35% |
| Indica II | 201 | 73.63% | 26.37% |
| Indica Intermediate | 194 | 72.68% | 27.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020511460 | T->G | LOC_Os10g38560(LOC_Os10g38560.1) | Non-Synonymous SNP |