Detailed information of SNP:
|
SNP ID:
sf1020511745(Gbrowse)
Chromosome: chr10 Position: 20511745 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 74.63% | 25.37% |
| All Indica | 784 | 56.89% | 43.11% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 371 | 46.09% | 53.91% |
| Indica II | 205 | 69.76% | 30.24% |
| Indica Intermediate | 208 | 63.46% | 36.54% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020511745 | A->G | LOC_Os10g38560(LOC_Os10g38560.1) | Synonymous |