Detailed information of SNP:
SNP ID:
sf1020518415(Gbrowse)
Chromosome: chr10 Position: 20518415 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1408 | 98.51% | 1.49% |
All Indica | 799 | 100.00% | 0.00% |
All Japonica | 486 | 95.68% | 4.32% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 327 | 94.19% | 5.81% |
Tropical Japonica | 92 | 98.91% | 1.09% |
Japonica Intermediate | 67 | 98.51% | 1.49% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1020518415 | C->T | LOC_Os10g38580(LOC_Os10g38580.1) | Synonymous |