Detailed information of SNP:
|
SNP ID:
sf1020527659(Gbrowse)
Chromosome: chr10 Position: 20527659 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 72.68% | 27.32% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 482 | 29.67% | 70.33% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 328 | 21.34% | 78.66% |
| Tropical Japonica | 89 | 66.29% | 33.71% |
| Japonica Intermediate | 65 | 21.54% | 78.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020527659 | G->T | INTERGENIC | None |