Detailed information of SNP:
|
SNP ID:
sf1020527684(Gbrowse)
Chromosome: chr10 Position: 20527684 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 61.57% | 38.43% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020527684 | G->A | INTERGENIC | None |