Detailed information of SNP:
|
SNP ID:
sf1020554213(Gbrowse)
Chromosome: chr10 Position: 20554213 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1313 | 98.86% | 1.14% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 400 | 96.50% | 3.50% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 262 | 95.42% | 4.58% |
| Tropical Japonica | 79 | 98.73% | 1.27% |
| Japonica Intermediate | 59 | 98.31% | 1.69% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020554213 | G->T | INTERGENIC | None |