Detailed information of SNP:
|
SNP ID:
sf1020649162(Gbrowse)
Chromosome: chr10 Position: 20649162 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 61.73% | 38.27% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020649162 | C->T | LOC_Os10g38890(LOC_Os10g38890.1) | Synonymous |