Detailed information of SNP:
SNP ID:
sf1020650045(Gbrowse)
Chromosome: chr10 Position: 20650045 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1419 | 96.55% | 3.45% |
All Indica | 799 | 99.87% | 0.13% |
All Japonica | 497 | 96.38% | 3.62% |
Aus | 67 | 74.63% | 25.37% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 99.53% | 0.47% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 96.12% | 3.88% |
Tropical Japonica | 94 | 97.87% | 2.13% |
Japonica Intermediate | 68 | 95.59% | 4.41% |
Group VI/Aromatic | 14 | 28.57% | 71.43% |
Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1020650045 | T->C | LOC_Os10g38890(LOC_Os10g38890.1) | INTRON |