Detailed information of SNP:
|
SNP ID:
sf1020671092(Gbrowse)
Chromosome: chr10 Position: 20671092 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 59.07% | 40.93% |
| All Indica | 797 | 95.36% | 4.64% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 373 | 94.64% | 5.36% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020671092 | A->G | INTERGENIC | None |