Detailed information of SNP:
|
SNP ID:
sf1020671591(Gbrowse)
Chromosome: chr10 Position: 20671591 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1329 | 76.30% | 23.70% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 410 | 28.05% | 71.95% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 274 | 30.66% | 69.34% |
| Tropical Japonica | 79 | 15.19% | 84.81% |
| Japonica Intermediate | 57 | 33.33% | 66.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020671591 | T->C | INTERGENIC | None |