Detailed information of SNP:
|
SNP ID:
sf1020675488(Gbrowse)
Chromosome: chr10 Position: 20675488 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 62.65% | 37.35% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020675488 | A->G | INTERGENIC | None |