Detailed information of SNP:
|
SNP ID:
sf1020701339(Gbrowse)
Chromosome: chr10 Position: 20701339 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 60.54% | 39.46% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020701339 | T->C | LOC_Os10g38970(LOC_Os10g38970.1) | INTRON |