Detailed information of SNP:
|
SNP ID:
sf1020764252(Gbrowse)
Chromosome: chr10 Position: 20764252 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 60.39% | 39.61% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020764252 | C->T | INTERGENIC | None |