Detailed information of SNP:
|
SNP ID:
sf1020801724(Gbrowse)
Chromosome: chr10 Position: 20801724 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 94.01% | 5.99% |
| All Indica | 799 | 91.86% | 8.14% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020801724 | A->G | LOC_Os10g39130(LOC_Os10g39130.2) | UTR_3_PRIME |
| sf1020801724 | A->G | LOC_Os10g39130(LOC_Os10g39130.1) | Non-Synonymous SNP |