Detailed information of SNP:
|
SNP ID:
sf1020806168(Gbrowse)
Chromosome: chr10 Position: 20806168 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 94.21% | 5.79% |
| All Indica | 799 | 91.86% | 8.14% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 82.81% | 17.19% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020806168 | A->G | INTERGENIC | None |