Detailed information of SNP:
|
SNP ID:
sf1020810283(Gbrowse)
Chromosome: chr10 Position: 20810283 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 54.24% | 45.76% |
| All Indica | 799 | 90.86% | 9.14% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 64 | 7.81% | 92.19% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1020810283 | G->A | INTERGENIC | None |